Publications for James J. Cimino

• 2014 - Pharmacogenomics - Developing Genomic Knowledge Bases and Databases to Support Clinical Management Current Perspectives
  
• 2014 - Methods - A Complementary Graphical Method for Reducing and Analyzing Large Data Sets - Case Studies Demonstrating Thresholds Setting and Selection
  
• 2014 - JBI - The National Instiutes of Health Biomedical Translational Research Information Systme - BTRIS
  
• 2014 - JBI - Consumer-mediated health information exchanges - the 2012 ACMI debate
  
• 2013- JAMIA - Terminology Challenges Implementing the HL7 Context-Aware Knowledge Retrieval 'Infobutton' Standard
  
• 2013 - PLOS1 - Linking ClinicalTrials
  
• 2013 - Medinfo - Disseminating Context-Specific Access to Online Knowledge Resources within Electronic Health Record Systems
  
• 2013 - Medinfo - Developing a Self-Service Query Interface for Re-Using De-Identified Electronic Health
  
• 2013 - Medical Care - Caveats for the Use of Operational Electronic Health Record Data in Comparative Effectiveness Research
  
• 2013 - JBI - The National Institutes of Health's Biomedical Translational Research Information System (BTRIS) - Design, contents, functionality and experience to date
  
• 2013 - JAMIA - Evaluating Adherence to the International Committee of Medical Journal Editors’ Policy of Mandatory, Timely Clinical Trial Registration
  
• 2013 - JAMA - Improving the electronic health record--are clinicians getting what they wished for
  
• 2013 - J Med Lib Assoc - A Comparison of Clinicians’ Access to Online Knowledge Resources Using Two Types of Information Retrieval Applications in an Academic Hospital Setting
  
• 2013 - AMIA CRI Characterization of the Biomedical Query Mediation Process
  
• 2013 - AMIA CRI - Visualizing the Data – Using Lifelines2 to Gain Insights from Data Drawn from a Clinical Data Repository
  
• 2013 - AMIA - Practical choices for infobutton customization - experience from four sites
  
• 2013 - AMIA - Desiderata for Healthcare Integrated Data Repositories Based on Architectural Comparison of Three Public Repositories
  
• 2012 - JBI - Incorporating personalized gene sequence variants, molecular genetics knowledge, and health knowledge into an EHR prototype based on the Continuity of Care Record standard
  
• 2012 - JBI - Implementations of the HL7 Context-Aware Knowledge Retrieval “Infobutton” Standard Challenges, Strengths, Limitations, and Uptake
  
• 2012 - JBI - Development and Evaluation of an Ontology for Guiding Appropriate Antibiotic Prescribing
  
• 2012 - JBI - A Study of Terminology Auditors’ Performance for UMLS Semantic Type Assignments
  
• 2012 - IJMI - Development of a Prototype Continuity of Care Record with Context-Specific Links to Meet the Information Needs of Case Managers for Persons Living with HIV
  
• 2012 - AMIA - Precision and Negative Predictive Value of Links between ClinicalTrials
  
• 2012 - AMIA - Meeting the electronic health record meaningful use criterion for the HL7 infobutton standard using OpenInfobutton and the Librarian Infobutton Tailoring Environment (LITE)
  
• 2012 - ACI - The False Security of Blind Dates
  
• 2011 - Methods - High-quality Standard Controlled Healthcare Terminologies Come of Age
  
• 2011 - JBI - AskHERMES - An online question answering system for complex clinical questions
  
• 2011 - JBI - A Comparison of Two Methods for Retrieving ICD-9-CM data - The Effect of Using an Ontology-based Method for Handling Terminology Changes
  
• 2011 - JAMIA - Information Needs of Case Managers Caring for Persons Living with HIV
  
• 2011 - AMIA - Improving adherence to research protocol drug exclusions using a clinical alerting system
  
• 2011 - AMIA - Graphical Methods for Reducing, Visualizing and Analyzing Large Data Sets Using Hierarchical Terminologies
  
• 2010 - Medinfo - The Clinical Research Data Repository of the US National Institutes of Health
  
• 2010 - JBI - Automatically Extracting Information Needs from Complex Clinical Questions
  
• 2010 - JBI - A network-theoretic approach for decompositional translation across Open Biological Ontologies
  
• 2010 - AMIA - Multi-National, Multi-Institutional Analysis of Clinical Decision Support Data Needs to Inform Development of the HL7 Virtual Medical Record Standard
  
• 2010 - AMIA - Interpreting Nurses Responses to Clinical Documentation Alerts
  
• 2010 - AMIA - A Large-Scale Knowledge Management Method Based on the Analysis of the Use of Online Knowledge Resources
  
• 2009 - eTelemed - Using Timeline Displays to Improve Medication Reconciliation
  
• 2009 - JBI - The caBIG Terminology Review Process
  
• 2009 - JBI - Practical Experience with the Maintenance and Auditing of a Large Medical Ontology
  
• 2009 - JBI - A Review of Auditing methods Applied to the Content of Controlled Biomedical Terminologies
  
• 2009 - JBI - A Review of Auditing Methods Applied to the Content of Controlled Biomedical Terminologies
  
• 2009 - JAMIA - Using semantic and structural properties of the Unified Medical Language System to discover potential terminological relationships
  
• 2009 - JAMIA - Information Needs Infobutton Manager Use and Satisfaction by Clinician Type
  
• 2009 - AMIA - Use of clinical alerting to improve the collection of clinical research data
  
• 2009 - AMIA - The contribution of observational studies and clinical context information for guiding the integration of infobuttons into clinical information systems
  
• 2008 - JAMIA - Effectiveness of Topic-Specific Infobuttons A Randomized Controleld Trial
  
• 2008 - AMIA - Leading a Horse to Water - Using Automated Reminders to Increase Use of Online Decision Support
  
• 2008 - AMIA - Identifying logical clinical context clusters in nursing orders for the purpose of information retrieval
  
• 2008 - AMIA - Identifying Logical Clinical Context Clusters in Nursing Orders for the
  
• 2008 - AMIA - Extracting Structured Medication Event Information from Discharge Summaries
  
• 2007 - Medinfo - Multitasking by Clinicians in the Context of CPOE and CIS Use
  
• 2007 - Medinfo - Medication Reconciliation Using Natural Language Processing and Controlled Terminologies
  
• 2007 - Medinfo - A Scale-Free Network View of the UMLS to Learn Terminology Translations
  
• 2007 - JAHIMA - Collect Once Use Many_files
  
• 2007 - JAHIMA - Collect Once Use Many
  
• 2007 - JAHIMA - Collect Once Use Many
  
• 2007 - AMIA - Semantic Query Generation from Eligibility Criteria in Clinical Trials
  
• 2007 - AMIA - Redesign of the Columbia University Infobutton Manager
  
• 2007 - AMIA - Information Needs Related to Antibiotic Prescribing While Using CPOE
  
• 2007 - AMIA - Evaluation of a UMLS Auditing Process of Semantic Type Assignments
  
• 2007 - AMIA - Decompositional Terminology Translation Using Network Analysis
  
• 2007 - AMIA - Auditing Dynamic Links to Online Information Resources
  
• 2007 - AMIA - A Methodology for Meeting Context-Specific Information Needs Related to Nursing Orders
  
• 2007 - AMIA - A Comparison of Two Methods for Retrieving ICD-9-CM Data
  
• 2007 - ACCA - An Integrated Approach to Computer-Based Decision Support at the Point of Care
  
• 2006 - Meth Inf Med - The Practical Impact of Ontologies on Biomedical Informatics
  
• 2006 - JBI - International Medical Informatics Association Working Group 6 and the 2005 Rome Conference
  
• 2006 - JBI - In Defense of the Desiderata
  
• 2006 - JBI - Heuristic Evaluation of Paper-Based Web Pages
  
• 2006 - AMIA - Use, Usability, Usefulness and Impact of an Infobutton Manager
  
• 2006 - AMIA - Mining Cross-Terminology Links in the UMLS
  
• 2006 - AMIA - Interruptions During Use of a CPOE System for MICU Rounds
  
• 2005 - NEJM - Personal Digital Educators
  
• 2005 - AMIA - Using Patient Data to Retrieve Health Knowledge
  
• 2004 - Medinfo - Using Natural Language Processing to Link from Medical Text to On-Line Information Resources
  
• 2004 - Medinfo - Structured Data Entry of Cross-Coverage Notes Using a PDA
  
• 2004 - Medinfo - Scenario-Based Assessment of Physicians Information Needs
  
• 2004 - Medinfo - Responding to Clinicians Information Needs - Designing a Context-Specific Calculator
  
• 2004 - Medinfo - Practical Considerations for Exploiting the World Wide Web to Create Infobuttons
  
• 2004 - Medinfo - Patterns of Usage for a Web-Based Clinical Information System
  
• 2004 - Medinfo - Development and Representation of a Fall-Injury Risk Assessment Instrument in a Clinical Information System
  
• 2004 - Medinfo - Automatic Summarization of Patient Discharge Summaries to Create Problem Lists Using Medical Language Processing
  
• 2004 - JBI - Towards the Development of a Conceptual Distance Metric for the UMLS
  
• 2004 - JAMIA - PalmCIS - A Wireless Handheld Application for Satisfying Clinician Information Needs
  
• 2004 - JAMIA - An Enriched UMLS Semantic Network with a Multiple Subsumption Hierarchy
  
• 2004 - IJMI - Approach to Mobile Information and Communication for Health Care
  
• 2004 - IDEAS Workshop - Knowledge Representation of Traditional Chinese Acupuncture Points Using the UMLS and a Terminology
  
• 2003 - JBI - Consistency Across the Hierarchies of the UMLS Semantic Network and Metathesaurus
  
• 2003 - JBI - Adequacy of Evolving National Standardized Terminologies for Interdisciplinary Coded Concepts in an Automated Clinical Pathway
  
• 2003 - JAMIA - Integrating Nursing Diagnostic Concepts into the Medical Entities Dictionary Using the ISO Reference Terminology Model for Nursing Diagnosis
  
• 2003 - AMIA - Use of Online Resources While Using a Clinical Information System
  
• 2003 - AMIA - The Classification of Clinicians Information Needs While Using a Clinical Information System
  
• 2003 - AMIA - Sharing Infobuttons to Resolve Clinicians Information Needs
  
• 2003 - AMIA - Development of Infobuttons in a Wireless Environment
  
• 2003 - AMIA - Clinical Information Needs in Context-An Observational Study of Clinicians While Using a Clinical Information System
  
• 2003 - AMIA - Characterizing Information Needs and Cognitive Processes During CIS Use
  
• 2003 - AMIA - Automated Identification of Shortcuts to Patient Data for a Wireless Handheld Clinical Information System
  
• 2003 - AMIA - Automated Identification of Shortcuts to Patient Data for a Wireless Handheld Clinical Informaiton System
  
• 2003 - AMIA - Automated Discovery of Patient-specific Clinician Information Needs Using Clinical Information System Log Files
  
• 2002 - JAMIA - Use of Wireless Technology for Reducing Medical Errors
  
• 2002 - JAMIA - Providing concept-oriented views for clinical data using a knowledge-based system - an evaluation
  
• 2002 - JAMIA - Perceived Information Needs and Communication Difficulties of Inpatient Physicians and Nurses
  
• 2002 - JAMIA - Development of an Ontology to Model Medical Errors Information Needs and the Clinical Communication Space
  
• 2002 - IJMI - The Patient Clinical Information System - PatCIS - Technical Solutions for and Experience with Giving Patients Access to their Electronic Medical Records
  
• 2002 - AMIA - Web-based tailoring and its effect on self-efficacy - results from the MI-HEART randomized controlled trial
  
• 2002 - AMIA - Using patient data to rank records of literature retrieval
  
• 2002 - AMIA - Theoretical, empirical and practical approaches to resolving the unmet information needs of clinical information system users
  
• 2002 - AMIA - The cognitive demands of an innovative query user interface
  
• 2002 - AMIA - Knowledge acquisition of generic queries for information retrieval
  
• 2002 - AMIA - Issues in developing clinical applications for the wireless environment
  
• 2002 - AMIA - Improving clinical communication with a virtual whiteboard
  
• 2002 - AMIA - Design of a Web-based care team scheduler for PalmCIS
  
• 2001 - Meth Inf Med - Terminology Tools - State of the Art and Practical Lessons
  
• 2001 - Medinfo - What Do Patients Do with Access to Their Medical Records
  
• 2001 - Medinfo - Developing Tailored Theory-Based Educational Content for Web Applications - Illustrations from the MI-HEART Project
  
• 2001 - Medinfo - Building a Knowledge Base to Support a Digital Library
  
• 2001 - JBI - Clinical Knowledge and Practice in the Information Age - A Handbook for Health Professionals
  
• 2001 - JBI - Accessing Heterogeneous Sources of evidence to Answer Clinical Quesitons
  
• 2001 - JBI - A Knowledge-Based Concept-Oreiented View Generation System for Clinical Data
  
• 2001 - JAMIA - Studying the Human-Computer-Terminology Interface
  
• 2001 - IJMI - Televaluation of clinical information systems - an integrative approach to assessing Web-based systems
  
• 2001 - AMIA - Using Narrative Reports to Support a Digitial Library
  
• 2001 - AMIA - Use of Wireless Technology for Reducing Medical Errors
  
• 2001 - AMIA - The MI-HEART Project - Information Technology fo One-to-One Tailored Patient Communicaiton
  
• 2001 - AMIA - Perceived Information Needs and Communication Difficulties of Inpatient Physicians and Nurses
  
• 2001 - AMIA - MI-HEART - A Comprehensive Management System to Deliver Monitor and Measure Efficacy of Individualized Web-Based Education
  
• 2001 - AMIA - Lessons Learned in the Early Phase of the MI-HEART Clincial Trial
  
• 2001 - AMIA - Just-in-Time Learning in the Emergency Department
  
• 2001 - AMIA - Integration of Nursing Assessment Concepts into the MED Using the LOINC Semantic Structure as a Terminology Model
  
• 2001 - AMIA - Integrating Existing Drug Formulation Terminologies into an HL7 Standard Classification using OpenGALEN
  
• 2001 - AMIA - Harnessing Web Information Technologies for Secure Adaptive and Individualized Health Communications
  
• 2001 - AMIA - Development of an Ontology to Model Medical Errors Information Needs and the Clinical Communicaiton Space
  
• 2001 - AMIA - Content Evaluation of a Knwledge Base
  
• 2001 - AMIA - Battling Scylla and Charybdis - The Search for Redundancy and Ambiguity in the 2001 UMLS Metathesaurus
  
• 2001 - AMIA - Assessment of Information Needs for Informed Coordinated Activities in the Clinical Environment
  
• 2000 - JAMIA - From Data to Knowledge through Concept-oriented Terminologies - Experience with the Medical Entities Dictionary
  
• 2000 - AMIA - Improving the Development of Composite Educational Guidelines Using Decomposition of Concept Lattices
  
• 2000 - AMIA - How to Partition a Complex Schema of Medical Terminology
  
• 2000 - AMIA - Formal Combinations of Guidelines - A Requirement for Self-Administered Personalized Health Education
  
• 2000 - AMIA - Exploring the Semantic Relations of Radiological Terms using UMLS Resources
  
• 2000 - AMIA - Evaluation of Web-Based Patient Information Resources - Application in the Assessment of a Patient Clinical Information System
  
• 2000 - AMIA - Developing and Evaluating Theory-Based Educational Content for WEB Applications
  
• 2000 - AMIA - Automated Knowledge Extraction from MEDLINE Citations
  
• 2000 - AMIA - An Infobutton for Enabling Patients to Interpret On-line Pap Smear Reports
  
• 2000 - AMIA - An Evaluation of Patient Access to their Electronic Medical Records via the World Wide Web
  
• 2000 - AMIA - A Web-Based System For Prediction Of Coronary Heart Disease Risk Using The Framingham Algorithm
  
• 1999 - Meth Inf Med - Toward a Framework for Computer-Medicated Collaborativee Design in Medical Informatics
  
• 1999 - MD Computing - The Columbia Medical Informatics Story - From Clinical System to Major Department
  
• 1999 - AMIA - What is Wrong with EMR
  
• 1999 - AMIA - WebCIS - Large Scale Deployment of a Web-based Clinical Information System
  
• 1999 - AMIA - Overcoming the Barriers of WEB-Based Interventions for Elder Patients - Enabling Strategies for the MI HEART Clinical Trial
  
• 1999 - AMIA - Modeling the UMLS Using an OODB
  
• 1999 - AMIA - Modeling Patient Response to Acute Myocardial Infarction - Implications for a Tailored Technology-Based Program to Reduce Patient Delay
  
• 1999 - AMIA - Linking Guidelines for Mammography to an Electronic Medical Record for Use by Patients
  
• 1999 - AMIA - Influence of Lay Conceptions of Health and Illness on Health Care Decision-Making - Implications for the Development of Technological Support
  
• 1999 - AMIA - Evaluation of the Information Sources Map
  
• 1999 - AMIA - Evaluation of a System to Identify Relevant Patient Information and Its Impact on Clinical Information Retrieval
  
• 1999 - AMIA - Evaluation of a Proposed Method for Representing Drug Terminology
  
• 1998 - Meth Inf Med - The Concepts of Language and the Language of Concepts
  
• 1998 - Meth Inf Med - Desiderata for Controlled Medical Vocabularies in the Twenty-First Century
  
• 1998 - JAMIA - Auditing the Unified Medical Language System with Semantic Methods
  
• 1998 - IJMI - Combining Laboratory data Sets from Multiple Insitutions Using LOINC
  
• 1998 - AMIA - Reproducibility of Interpreting and and or in Terminology Systems
  
• 1998 - AMIA - Development of a Standard Terminology to Support Medication Messages
  
• 1998 - AMIA - Designing Evaluation of Web-Based Information Resources - Televaluation of Patient Clinical Information Systems
  
• 1998 - AMIA - Automated Knowledge Extraction from the UMLS
  
• 1998 - AMIA - Automated Integration of a Diagnostic Decision Support System with a Large Scale Clinical Information System - Aspects of Feasibility
  
• 1998 - AMIA - Architecture for a Web-Based Clinical Information System that Keeps the Design Open and the Access Closed
  
• 1998 - AMIA - A Proposal for Incorporating Health Level Seven (HL7) Vocabulary in the UMLS Metathesaurus
  
• 1998 - AI Med - Distributed Cognition and Knowledge-Based Controlled Medical Terminologies
  
• 1998 - AI Med - A Study of Collaboration Among Medical Informatics Research Laboratories
  
• 1997 - JAMIA - Beyond the Superhighway - Exploiting the Internet with Medical Informatics
  
• 1997 - AMIA - Using Logical Observation Identifier Names and Codes (LOINC) to Exchange Laboratory Data Among Three Academic Hospitals
  
• 1997 - AMIA - Usability Testing in Medical Informatics - Cognitive Approaches to Evaluation of Information Systems and User Interfaces
  
• 1997 - AMIA - Supporting Infobuttons with Terminological Knowledge
  
• 1997 - AMIA - Partitioning a Vocabulary-s IS-A Hierarchy into Trees
  
• 1997 - AMIA - Linking A Clinical System to Heterogeneous Information Resources
  
• 1997 - AMIA - Designing a Student Clinical Workstation - Challenges and Opportunities
  
• 1997 - AMIA - Controlled Vocabulary and Design of Laboratory Results Displays
  
• 1996 -AMIA - Mapping Medical Vocabularies to the Unified Medical Language System
  
• 1996 - Meth Inf Med - Linking Patient Information Systems to Bibliographic Resources
  
• 1996 - Meth Inf Med - Formal Descriptions and Adaptive Mechanisms for Changes in Controlled Medical Vocabularies
  
• 1996 - Meth Inf Med - Coding Systems in Health Care
  
• 1996 - JAMIA - Access to Data - Comparing AccessMed with Query by Review
  
• 1996 - AMIA - Just Tell Me What You Want - The Promises and Perils of Rapid Prototyping with the World Wide Web
  
• 1996 - AMIA - Integrating DXplain into a Clinical Information System Using the World Wide Web
  
• 1995 - Yearbook of Medical Informatics -Review - Coding Systems in Health Care
  
• 1995 - Yearbook of Medical Informatics - Education and Training - Medical Informatics Training at Columbia University and the Columbia Presbyterian Medical Center
  
• 1995 - SCAMC - The Informatics Superhighway-Prototyping on the World Wide Web
  
• 1995 - Meth Inf Med - Use of the Unified Medical Language System in Patient Care at the Columbia Presbyterian Medical Center
  
• 1995 - MedInfo - Managing Vocabulary for a Centralized Clinical System
  
• 1995 - JASIS - Vocabulary and Health Care Information Technology-State of the Art
  
• 1995 - JAMIA - The Canon Group's Effort - Working Toward a Merged Model
  
• 1995 - JAMIA - Internet as Clinical Information System - Application Development Using the World Wide Web
  
• 1994 - SCAMC - Coping with Changing Controlled Vocabularies
  
• 1994 - JAMIA - Toward a Medical-Concept Representation Language
  
• 1994 - JAMIA - Knowledge-based Approaches to the Maintenance of a Large Controlled Medical Terminology
  
• 1994 - JAMIA - Controlled Medical Vocabulary Construction - Methods from the Canon Group
  
• 1994 - Int J Biomed Comp - Data Storage and Knowledge Representaion for Clinical Workstations
  
• 1993 - SCAMC - From ICD9-CM to MeSH, Using the UMLS-A How-to Guide
  
• 1993 - Meth Inf Med - Automatic Knowledge Acquisition from Medline
  
• 1993 - Bull MLA - Generic Queries for Meeting Clinical Information Needs
  
• 1993 - Acad Med - Saying What You Mean and Meaning What You Say-Coupling Biomedical Terminology and Knowledge
  
• 1992 - SCAMC - The Medline Button
  
• 1992 - CBR - As We May Think - The Concept Space and Medical Hypertext
  
• 1991 - SCAMC - The Columbia-Presbyterian Medical Center Decision-Support System as a Model for Implementing the Arden Syntax
  
• 1991 - SCAMC - Representation of Clinical Laboratory Terminology in the Unified Medical Language System
  
• 1991 - SCAMC - Conceptual Data Model for a Central Patient Database
  
• 1991 - MDM - Using the UMLS to Bring the Library to the Bedside
  
• 1991 - MDM - IAIMS and UMLS at Columbia Presbyterian Medical Center
  
• 1990 - SCAMC - UMLS as Knowledge Base-A Rule-Based Expert System Approach to Controlled Medical Vocabulary Management
  
• 1990 - MD Computing - Automated Translation between Medical Terminologies using Semantic Definitions
  
• 1989 - SCAMC - Designing and Introspective, Multipurpose, Controlled Medical Vocabulary
  
• 1989 - NEJM - Nosocomial Clostridium difficile infections
  
• 1988 - SCAMC - Automated Extraction of Medical Knowledge from Medline Citations
  
• 1987 - SCAMC - The Physician's Workstation-Recording a Physical Examination Using a Controlled Vocabulary
  
• 1987 - SCAMC - DXplain-Experience with Knowledge Acquisition and Program Evaluation
  
• 1987 - JAMA - DXplain-An Evolving Diagnostic Decision-Support System
  
• 1981 - SCAMC - Graphical Display of Clinical and Laboratory Data Using a Desktop Computer Interfaced with a Hospital Information System